{"id":8452,"date":"2012-12-01T22:26:07","date_gmt":"2012-12-01T22:26:07","guid":{"rendered":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=8452"},"modified":"2012-12-01T22:26:07","modified_gmt":"2012-12-01T22:26:07","slug":"the-mechanism-of-the-birch-reduction-part-1","status":"publish","type":"post","link":"https:\/\/rzepa.net\/blog\/2012\/12\/01\/the-mechanism-of-the-birch-reduction-part-1\/","title":{"rendered":"The mechanism of the Birch reduction. Part 1: reduction of anisole."},"content":{"rendered":"<p>The <a href=\"http:\/\/en.wikipedia.org\/wiki\/Birch_reduction#Experimental_testing_and_computational_verification\" target=\"_blank\">Birch reduction<\/a> is a classic method for partially reducing <em>e.g.<\/em> aryl ethers using <strong>electrons<\/strong> (from sodium dissolved in ammonia) as the reductant rather than <em>e.g.<\/em> <a href=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=8375\" target=\"_blank\">dihydrogen<\/a>. As happens occasionally in chemistry, a long debate broke out over the two alternative mechanisms labelled <strong><span style=\"color: #3366ff;\">O<\/span><\/strong> (for ortho protonation of the initial radical anion intermediate) or <strong><span style=\"color: #ff0000;\">M<\/span><\/strong> (for meta protonation). Text books seem to have settled down of late in favour of <span style=\"color: #00ccff;\"><strong>O<\/strong><\/span>. Here I take a look at the issue myself.<\/p>\n<p><img decoding=\"async\" class=\"aligncenter size-full wp-image-8454\" title=\"birch\" alt=\"\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/birch.svg\" \/><\/p>\n<p>Readers of my blog will note that I promote the use of models which are as reasonably complete as one can make them. In this case, if the intermediate is an anion, then I argue that the model should include the positive counter-ion. This is very often simply <a href=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=7100\" target=\"_blank\">not included<\/a>, on the grounds that it &#8220;probably does not influence things&#8221;. Well, not on this blog! My model is methoxybenzene, a sodium atom solvated by 3NH<sub>3<\/sub> (the reaction itself is done in liquid ammonia with some added t-butanol) and continuum solvent (not ammonia itself, but acetonitrile which has a similar dielectric to liquid ammonia with some added butanol).\u00a0<\/p>\n<p>The start point is a solvated sodium atom (loosely) coordinated to anisole (methoxybenzene). The <a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.100562\" target=\"_blank\">calculation<\/a> (\u03c9B97XD\/6-311+G(d,p)\/SCRF=acetonitrile) on this neutral system shows the spin density arising from the single unpaired electron is mostly (0.851) on the sodium, although a little spin density has crept onto the anisole. The dipole moment (12.0D) shows that solvation cannot just be ignored.\u00a0<\/p>\n<figure id=\"attachment_8459\" aria-describedby=\"caption-attachment-8459\" style=\"width: 192px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-8459 \" title=\"birch1\" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([450,450],'load wp-content\/uploads\/2012\/12\/birch-678.552983.log;frame 12;connect (atomno=17) (atomno=18) PARTIAL;connect (atomno=17) (atomno=24) PARTIAL;connect (atomno=17) (atomno=21) PARTIAL;vectors on;vectors 4;measure 1 2;measure 4 5;vectors scale 5.0; color vectors orange; vibration 20;animation mode loop;');\" alt=\"\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/birch1.jpg\" width=\"192\" height=\"235\" \/><figcaption id=\"caption-attachment-8459\" class=\"wp-caption-text\">Start point, with select spin densities. Click for 3D<\/figcaption><\/figure>\n<p>The next stage involves an electron transfer from the sodium to the anisole ring, and indeed the spin densities transfer from the Na to the two <span style=\"color: #33cccc;\">ortho-<\/span> and two <span style=\"color: #ff0000;\">meta-<\/span>positions on the ring (the residual value on Na is -0.02). This suggests that the valence bond representations in the diagram above are incomplete (they imply spin density on only two rather than four carbon atoms). The <a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.100636\" target=\"_blank\">geometry of the anisole ring<\/a> now shows bond alternation, with two long bonds (1.45 &#8211; 1.46\u00c5) and four short bonds (1.39-1.41\u00c5). This could be viewed as the result of a <a href=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=485\" target=\"_blank\">pseudo-Jahn-Teller distortion<\/a> resulting from placing an electron into one of the degenerate LUMO molecular orbitals of the benzene-like set.\u00a0The free energy \u0394G<sub>298\u00a0<\/sub>of this charge-transferred product is 11.1 kcal\/mol exothermic compared to the reactant and it has a dipole moment of 11.6D, similar to the precursor despite being an ion pair!<\/p>\n<figure id=\"attachment_8464\" aria-describedby=\"caption-attachment-8464\" style=\"width: 210px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-8464 \" title=\"birch2\" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([450,450],'load wp-content\/uploads\/2012\/12\/birch-ion-pair-678.570679.log;frame 60;connect (atomno=17) (atomno=18) PARTIAL;connect (atomno=17) (atomno=24) PARTIAL;connect (atomno=17) (atomno=21) PARTIAL;measure 1 2;measure 4 5;vectors on;vectors 4;vectors scale 5.0; color vectors orange; vibration 20;animation mode loop;');\" alt=\"\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/birch2.jpg\" width=\"210\" height=\"219\" \/><figcaption id=\"caption-attachment-8464\" class=\"wp-caption-text\">The contact ion-pair resulting from electron transfer. Click for 3D.<\/figcaption><\/figure>\n<p>I start the analysis of how this species will protonate by inspecting the four highest energy NBOs (natural bond orbitals). Their energies are -0.144, -0.152, -0.167 and -0.167 au. The first of these with the highest energy might be expected to be the most basic. It corresponds to <span style=\"color: #ff0000;\"><strong>M<\/strong><\/span> in the above scheme (below). The next however is <span style=\"color: #00ffff;\"><strong>O<\/strong><\/span> and the last two are the remaining O\/M positions.<\/p>\n<p><figure id=\"attachment_8476\" aria-describedby=\"caption-attachment-8476\" style=\"width: 277px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\"size-full wp-image-8476\" title=\"50\" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([450,450],'load wp-content\/uploads\/2012\/12\/birch-ionpair_mo50.cub.xyz;isosurface color orange purple wp-content\/uploads\/2012\/12\/birch-ionpair_mo50.cub.jvxl translucent;zoom 80;');\" alt=\"\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/50.jpg\" width=\"277\" height=\"300\" \/><figcaption id=\"caption-attachment-8476\" class=\"wp-caption-text\">Highest energy (-0.144) NBO orbital on M. Click for 3D.<\/figcaption><\/figure><br \/>\n<figure id=\"attachment_8486\" aria-describedby=\"caption-attachment-8486\" style=\"width: 240px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\"size-full wp-image-8486\" title=\"49\" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([450,450],'load wp-content\/uploads\/2012\/12\/birch-ionpair_mo50.cub.xyz;isosurface color yellow blue wp-content\/uploads\/2012\/12\/birch-ionpair_mo49.cub.jvxl translucent;zoom 80;');\" alt=\"\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/491.jpg\" width=\"240\" height=\"280\" \/><figcaption id=\"caption-attachment-8486\" class=\"wp-caption-text\">Next highest energy (-0.152) \u00a0NBO on O. Click for 3D.<\/figcaption><\/figure><\/p>\n<p>Another measure of basicity is the molecular electrostatic potential (a measure of how attractive any point in space is towards a proton). It is shown below (as a green surface) only as the -ve potential (that part that is attractive to a proton). On the face bearing the proton donors (the ammonia groups attached to the Na) there is a clear preference for <span style=\"color: #33cccc;\"><strong>O<\/strong><\/span> (marked with a magenta arrow, but not the same O as predicted by the NBO), but with a slightly smaller basin corresponding to <span style=\"color: #ff0000;\"><strong>M <\/strong><span style=\"color: #000000;\">(again, not the M from the NBO analysis and marked with an orange arrow).<\/span><\/span><\/p>\n<figure id=\"attachment_8479\" aria-describedby=\"caption-attachment-8479\" style=\"width: 180px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-8479 \" title=\"ESP\" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([450,450],'load wp-content\/uploads\/2012\/12\/birch-ionpair_esp.cub.xyz;isosurface color green wp-content\/uploads\/2012\/12\/birch-ionpair_esp.cub.jvxl translucent;zoom 80;');\" alt=\"\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/ESP.jpg\" width=\"180\" height=\"202\" \/><figcaption id=\"caption-attachment-8479\" class=\"wp-caption-text\">Molecular electrostatic potential (-ve phase). Click for 3D<\/figcaption><\/figure>\n<p>Viewed from the other side of the anisole ring (and rendered at a higher threshold), the electrostatic potential seems to favour <span style=\"color: #0000ff;\"><strong>O<\/strong><\/span>, but only very slightly over\u00a0<strong><span style=\"color: #ff0000;\">M<\/span><\/strong>. There really is not much in it.<\/p>\n<figure id=\"attachment_8494\" aria-describedby=\"caption-attachment-8494\" style=\"width: 179px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-8494 \" title=\"ESP1\" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([450,450],'load wp-content\/uploads\/2012\/12\/birch-ionpair_esp.cub.xyz;isosurface color yellow wp-content\/uploads\/2012\/12\/birch-ionpair_esp.119.jvxl translucent;zoom 80;');\" alt=\"\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/ESP1.jpg\" width=\"179\" height=\"237\" \/><figcaption id=\"caption-attachment-8494\" class=\"wp-caption-text\">Molecular electrostatic potential (-ve phase, other face).\u00a0Click for 3D.<\/figcaption><\/figure>\n<p>All these properties are measures of the radical-anion-ion-pair. It is clear these different measures do not agree with one another! What we really need is the transition state for the proton transfer. I will go off and hunt for these. If I find them, I will report back here.\u00a0And beyond the transition state are the dynamic trajectories for the protonation, which ultimately may be the only way of finally resolving this conundrum.\u00a0<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The Birch reduction is a classic method for partially reducing e.g. aryl ethers using electrons (from sodium dissolved in ammonia) as the reductant rather than e.g. dihydrogen. As happens occasionally in chemistry, a long debate broke out over the two alternative mechanisms labelled O (for ortho protonation of the initial radical anion intermediate) or M [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[788,902,1038,2076,2489],"class_list":["post-8452","post","type-post","status-publish","format-standard","hentry","category-uncategorized","tag-dielectric","tag-energy","tag-free-energy","tag-reaction-mechanism","tag-tutorial-material"],"_links":{"self":[{"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/posts\/8452","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/comments?post=8452"}],"version-history":[{"count":0,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/posts\/8452\/revisions"}],"wp:attachment":[{"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/media?parent=8452"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/categories?post=8452"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/tags?post=8452"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}