{"id":9512,"date":"2013-02-12T11:41:08","date_gmt":"2013-02-12T11:41:08","guid":{"rendered":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=9512"},"modified":"2013-02-12T11:41:08","modified_gmt":"2013-02-12T11:41:08","slug":"helically-conjugated-molecules-a-follow-up-to-144-annulene","status":"publish","type":"post","link":"https:\/\/rzepa.net\/blog\/2013\/02\/12\/helically-conjugated-molecules-a-follow-up-to-144-annulene\/","title":{"rendered":"Helically conjugated molecules. A follow-up to [144]-annulene."},"content":{"rendered":"<p>An extensive discussion developed regarding<a href=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=9322\" target=\"_blank\"> my post<\/a> on a fascinating helical [144]-annulene. Topics included the nature of the ring current sustained by the\u00a0\u03c0-electrons and in particular the bond-length alternation around the periphery and whether this should alter if the electron count were to be changed to that of a 4n+2 system (<em>i.e.<\/em> a dication). Whilst the [144]-annulene itself is hypothetical, it emerged that some compounds known as expanded porphyrins have very similar (albeit smaller scale) helical structures. X-ray structures for two such provide useful reality checks on the calculations. Here<sup>\u2021\u00a0<\/sup>I include the (3D) coordinates of these two systems so that you can explore for yourself their helicity.<\/p>\n<figure id=\"attachment_9513\" aria-describedby=\"caption-attachment-9513\" style=\"width: 451px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-9513 \" onclick=\"jmolInitialize('..\/Jmol\/','JmolAppletSigned.jar');jmolSetAppletColor('white');jmolApplet([450,450],'load wp-content\/uploads\/2013\/02\/SELQUW.cif;');\" alt=\"SELQUW. Click for 3D.\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2013\/02\/SELQUW.jpg\" width=\"451\" height=\"278\" \/><figcaption id=\"caption-attachment-9513\" class=\"wp-caption-text\">SELQUW. Click for 3D X-ray structure<\/figcaption><\/figure>\n<p>&nbsp;<\/p>\n<figure id=\"attachment_9514\" aria-describedby=\"caption-attachment-9514\" style=\"width: 466px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-9514 \" onclick=\"jmolInitialize('..\/Jmol\/','JmolAppletSigned.jar');jmolSetAppletColor('white');jmolApplet([450,450],'load wp-content\/uploads\/2013\/02\/HIYTAL.cif;');\" alt=\"HIYTAL. Click for 3D.\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2013\/02\/HIYTAL.jpg\" width=\"466\" height=\"211\" \/><figcaption id=\"caption-attachment-9514\" class=\"wp-caption-text\">HIYTAL. Click for 3D X-ray structure<\/figcaption><\/figure>\n<p>I include below \u0394<sub>r<\/sub><sup>meso<\/sup>, being the mean unsigned difference in bond length (\u00c5) at the <a href=\"http:\/\/www.ch.ic.ac.uk\/rzepa\/talks\/acs09-comp\/\" target=\"_blank\">meso positions of the porphrin <\/a>ring, the calculations being at the 6-311G(d,p) level using the DFT procedure indicated below. The linking number analysis[cite]10.1021\/ja710438j[\/cite] for such systems will be reported elsewhere.[cite]10.1021\/ol703129z[\/cite]<\/p>\n<table class=\"aligncenter\" border=\"1\" align=\"center\">\n<tbody>\n<tr>\n<td>Method<\/td>\n<td>SELQUW<\/td>\n<td>HIYTAL<\/td>\n<\/tr>\n<tr>\n<td>X-ray<\/td>\n<td>0.048<\/td>\n<td>0.045<\/td>\n<\/tr>\n<tr>\n<td>B97D\/6-311G(d,p)<\/td>\n<td><a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.156475\" target=\"_blank\">0.025<\/a><\/td>\n<td><a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.156394\" target=\"_blank\">0.015<\/a><\/td>\n<\/tr>\n<tr>\n<td>B3LYP\/6-311G(d,p)<\/td>\n<td><a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.156532\" target=\"_blank\">0.047<\/a><\/td>\n<td><a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.156528\" target=\"_blank\">0.017<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<hr \/>\n<p><sup>\u2021<\/sup><span style=\"font-size: x-small;\">The WordPress system operated here does not enable 3D coordinates to be inserted into the comment section of a post, only the main body.<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>An extensive discussion developed regarding my post on a fascinating helical [144]-annulene. Topics included the nature of the ring current sustained by the\u00a0\u03c0-electrons and in particular the bond-length alternation around the periphery and whether this should alter if the electron count were to be changed to that of a 4n+2 system (i.e. a dication). Whilst [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[11],"tags":[1154,2627],"class_list":["post-9512","post","type-post","status-publish","format-standard","hentry","category-interesting-chemistry","tag-helical-annulenes","tag-x-ray"],"_links":{"self":[{"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/posts\/9512","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/comments?post=9512"}],"version-history":[{"count":0,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/posts\/9512\/revisions"}],"wp:attachment":[{"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/media?parent=9512"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/categories?post=9512"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/rzepa.net\/blog\/wp-json\/wp\/v2\/tags?post=9512"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}